Re: [AMBER] Free Energy Calculations of Potassium and Chloride

From: David A Case <case.biomaps.rutgers.edu>
Date: Thu, 26 Jan 2012 08:07:41 -0500

On Wed, Jan 25, 2012, Sai Kumar Ramadugu wrote:

> According to the authors' approach:
> Step1: N0 + N0 ---> K+ + Cl-
> Step2: K+ + N0 ---> N0 + Cl-

I had not seen this approach before, so cannot provide any relevant
experience.

> Further I noticed that when I set dvdl_norest = 1, the free energy part of
> the output file does not print this option.

Sounds like a bug; we'll try to get that printed in future releases. You can
add the print statement yourself if you want to be sure what value the program
is using.

....regards....dac


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Received on Thu Jan 26 2012 - 05:30:02 PST
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