I messed around a bit with online recommendations for replacing multiple spaces with tabs, got one to work & I'm pretty sure that now the make has gotten past pbsa. Seems to be a similar problem elsewhere, now... Thanks!
Irene
> Date: Tue, 24 Jan 2012 13:16:44 -0500
> From: jason.swails.gmail.com
> To: amber.ambermd.org
> Subject: Re: [AMBER] AmberTools 1.5 & Centos6
>
> I meant the pbsa/Makefile, sorry for any confusion.
>
> On Tue, Jan 24, 2012 at 12:22 PM, Irene Newhouse <einew.hotmail.com> wrote:
>
> >
> > I've attached the Makefile, which I haven't changed. Line 208 seems to be
> > tabbed just like the others. I looked at the error messages & the cd to
> > $AMBERHOME/AmberTools/src/pbsa is line 197. It is also tabbed, not spaced,
> > as nearly as I can tell - that is, all the lines in that neighborhood react
> > to the cursor the same: I can use the arrow key to place the cursor in the
> > space immediately to the left of the first printing character & nowhere
> > further to the left.
> >
> > Thanks!
> > Irene
> >
> > > Date: Mon, 23 Jan 2012 16:35:43 -0500
> > > From: jason.swails.gmail.com
> > > To: amber.ambermd.org
> > > Subject: Re: [AMBER] AmberTools 1.5 & Centos6
> > >
> > > Can you post your $AMBERHOME/AmberTools/src/pbsa/Makefile here? A quick
> > > google suggests that this error is caused because line 208 of that
> > Makefile
> > > is using spaces instead of tabs to indent a line. Can you verify that
> > this
> > > is true? If it is true, can you replace those spaces with a tab?
> > >
> > > On Mon, Jan 23, 2012 at 2:49 PM, Irene Newhouse <einew.hotmail.com>
> > wrote:
> > >
> > > >
> > > > I had had an AmberTools 1.5 installation on my linux box under
> > Centos5.x.
> > > > I recently upgraded to Centos6 & tried to reinstall. I have gcc 4.4.6
> > and
> > > > flex 2.5.35-8. Yes, I downloaded the latest version of the bugfixes,
> > and
> > > > patched successfully. The make goes a long way, and then crashes:
> > > >
> > > > make[1]: Leaving directory `/opt/amber11/AmberTools/src/chamber'
> > > > (cd pbsa && make install )
> > > > make[1]: Entering directory `/opt/amber11/AmberTools/src/pbsa'
> > > > Makefile:208: *** missing separator. Stop.
> > > > make[1]: Leaving directory `/opt/amber11/AmberTools/src/pbsa'
> > > > make: *** [serial] Error 2
> > > >
> > > > Does anyone have any advice for me?
> > > >
> > > > Thanks!
> > > > Irene Newhouse
> > > >
> > > >
> > > >
> > > >
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> > >
> > >
> > > --
> > > Jason M. Swails
> > > Quantum Theory Project,
> > > University of Florida
> > > Ph.D. Candidate
> > > 352-392-4032
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> > > AMBER.ambermd.org
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> >
> >
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> >
> >
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
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Received on Tue Jan 24 2012 - 12:00:03 PST
