I meant the pbsa/Makefile, sorry for any confusion.
On Tue, Jan 24, 2012 at 12:22 PM, Irene Newhouse <einew.hotmail.com> wrote:
>
> I've attached the Makefile, which I haven't changed. Line 208 seems to be
> tabbed just like the others. I looked at the error messages & the cd to
> $AMBERHOME/AmberTools/src/pbsa is line 197. It is also tabbed, not spaced,
> as nearly as I can tell - that is, all the lines in that neighborhood react
> to the cursor the same: I can use the arrow key to place the cursor in the
> space immediately to the left of the first printing character & nowhere
> further to the left.
>
> Thanks!
> Irene
>
> > Date: Mon, 23 Jan 2012 16:35:43 -0500
> > From: jason.swails.gmail.com
> > To: amber.ambermd.org
> > Subject: Re: [AMBER] AmberTools 1.5 & Centos6
> >
> > Can you post your $AMBERHOME/AmberTools/src/pbsa/Makefile here? A quick
> > google suggests that this error is caused because line 208 of that
> Makefile
> > is using spaces instead of tabs to indent a line. Can you verify that
> this
> > is true? If it is true, can you replace those spaces with a tab?
> >
> > On Mon, Jan 23, 2012 at 2:49 PM, Irene Newhouse <einew.hotmail.com>
> wrote:
> >
> > >
> > > I had had an AmberTools 1.5 installation on my linux box under
> Centos5.x.
> > > I recently upgraded to Centos6 & tried to reinstall. I have gcc 4.4.6
> and
> > > flex 2.5.35-8. Yes, I downloaded the latest version of the bugfixes,
> and
> > > patched successfully. The make goes a long way, and then crashes:
> > >
> > > make[1]: Leaving directory `/opt/amber11/AmberTools/src/chamber'
> > > (cd pbsa && make install )
> > > make[1]: Entering directory `/opt/amber11/AmberTools/src/pbsa'
> > > Makefile:208: *** missing separator. Stop.
> > > make[1]: Leaving directory `/opt/amber11/AmberTools/src/pbsa'
> > > make: *** [serial] Error 2
> > >
> > > Does anyone have any advice for me?
> > >
> > > Thanks!
> > > Irene Newhouse
> > >
> > >
> > >
> > >
> > > _______________________________________________
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> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> >
> >
> >
> > --
> > Jason M. Swails
> > Quantum Theory Project,
> > University of Florida
> > Ph.D. Candidate
> > 352-392-4032
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Tue Jan 24 2012 - 10:30:02 PST
