Hey,
I've read and followed
http://ambermd.org/HowToCompileAmberTools1.5AndAMBER11WithUbuntu10.04.3LTS.html
Under "Serial compilation", section "AMBER", there is no configure step
mentioned. Also, according to that manual, it is not necessary to
execute AT15_Amber11.py.
I exactly followed this manual. Hence, I incorporated all bugfixes.
During `make serial` in $AMBERHOME/src, I got an error like
cannot stat: ../../AmberTools/src/netcdf/include/*.mod -- no such file
or directory
(I lost the original message.) In fact, I verified that there was no
directory $AMBERHOME/AmberTools/src/netcdf/include. I've then executed
AT15_Amber11.py, because I've seen that one of its patches deals with
exactly this directory. I invoked `make serial` again and it finished
properly.
AT15 bugfix 24 should "automagically" apply the AT15_Amber11.py script.
However, following the steps of the manual it does not seem to work
properly. I believe that either the AT15_Amber11.py step should be added
to the manual or the bugfix 24 is not working correctly.
Thanks,
Jan-Philip
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Received on Fri Jan 13 2012 - 07:00:05 PST
