Hello,
I am trying to recompile AMBER11 with AmberTools 1.5 with the
latest bugfixes using Intel Compilers version 12. I've also tried GNU
compilers and getting the same error. I include the log pasted below.
Thanks in advance.
Kind Regards,
Lic. Lucas A. Defelipe
Laboratorio de Bioinformática Estructural - QB6
Departamento de Química Biológica, FCEyN - UBA e INQUIMAE-CONICET
4to. piso Ciudad Universitaria Pabellón II
Int. Guiraldes 2620 C1428EHA
Ciudad Autónoma de Buenos Aires, Argentina
Tel: +54 11 4576 3300 int 205
http://bioinf.qb.fcen.uba.ar
Output
/bin/bash ../libtool --mode=link icc -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -DBINTRAJ -ip -O3 -axSTPW -DBINTRAJ -DHASGZ -o
fftw_test fftw_test.o test_main.o ../fftw/libdfftw.la -lm
mkdir .libs
icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -ip -O3 -axSTPW
-DBINTRAJ -DHASGZ -o fftw_test fftw_test.o test_main.o
../fftw/.libs/libdfftw.a -lm
icc: command line remark #10279: option '-axS' is deprecated and will be
removed in a future release. See '-help deprecated'
icc: command line remark #10279: option '-axT' is deprecated and will be
removed in a future release. See '-help deprecated'
icc: command line remark #10279: option '-axP' is deprecated and will be
removed in a future release. See '-help deprecated'
icc: command line remark #10279: option '-axW' is deprecated and will be
removed in a future release. See '-help deprecated'
fftw_test.o: In function `test_speed_aux':
fftw_test.c:(.text+0x3d2): undefined reference to `fftw'
fftw_test.o: In function `fftw_plan_hook_function':
fftw_test.c:(.text+0x17f7): undefined reference to `fftw'
fftw_test.c:(.text+0x1822): undefined reference to `fftw'
fftw_test.c:(.text+0x18d0): undefined reference to `fftw'
fftw_test.c:(.text+0x18f8): undefined reference to `fftw'
fftw_test.o:fftw_test.c:(.text+0x1f47): more undefined references to `fftw'
follow
fftw_test.o: In function `test_out_of_place':
fftw_test.c:(.text+0xbc1d): undefined reference to `fftw_one'
fftw_test.o: In function `test_in_place':
fftw_test.c:(.text+0xbf09): undefined reference to `fftw'
fftw_test.c:(.text+0xc039): undefined reference to `fftw'
fftw_test.c:(.text+0xc13e): undefined reference to `fftw_one'
fftw_test.o: In function `test_ergun':
fftw_test.c:(.text+0xc413): undefined reference to `fftw'
fftw_test.c:(.text+0xc43e): undefined reference to `fftw'
fftw_test.c:(.text+0xc4ed): undefined reference to `fftw'
fftw_test.c:(.text+0xc515): undefined reference to `fftw'
fftw_test.c:(.text+0xcb54): undefined reference to `fftw'
fftw_test.o:fftw_test.c:(.text+0xcb7c): more undefined references to `fftw'
follow
test_main.o: In function `handle_option':
test_main.c:(.text+0x20c4): undefined reference to `fftw_version'
../fftw/.libs/libdfftw.a(planner.o): In function `planner_normal':
planner.c:(.text+0x8c9): undefined reference to `fftw'
planner.c:(.text+0xe48): undefined reference to `fftw'
planner.c:(.text+0x143a): undefined reference to `fftw'
planner.c:(.text+0x1670): undefined reference to `fftw'
planner.c:(.text+0x19bd): undefined reference to `fftw'
../fftw/.libs/libdfftw.a(fftwnd.o):fftwnd.c:(.text+0x2189): more undefined
references to `fftw' follow
../fftw/.libs/libdfftw.a(malloc.o): In function `fftw_check_memory_leaks':
malloc.c:(.text+0xf5): undefined reference to `fftw_twiddle_size'
malloc.c:(.text+0x120): undefined reference to `fftw_twiddle_size'
../fftw/.libs/libdfftw.a(putils.o): In function `fftw_make_node_twiddle':
putils.c:(.text+0x164): undefined reference to `fftw_create_twiddle'
../fftw/.libs/libdfftw.a(putils.o): In function `fftw_make_node_hc2hc':
putils.c:(.text+0x1f2): undefined reference to `fftw_create_twiddle'
../fftw/.libs/libdfftw.a(putils.o): In function `fftw_make_node_generic':
putils.c:(.text+0x26e): undefined reference to `fftw_create_twiddle'
../fftw/.libs/libdfftw.a(putils.o): In function `fftw_make_node_rgeneric':
putils.c:(.text+0x337): undefined reference to `fftw_create_twiddle'
../fftw/.libs/libdfftw.a(putils.o): In function `fftw_complete_twiddle':
putils.c:(.text+0x48c): undefined reference to `fftw_create_twiddle'
../fftw/.libs/libdfftw.a(putils.o):putils.c:(.text+0x49e): more undefined
references to `fftw_create_twiddle' follow
../fftw/.libs/libdfftw.a(putils.o): In function `destroy_tree':
putils.c:(.text+0x607): undefined reference to `fftw_destroy_twiddle'
putils.c:(.text+0x617): undefined reference to `fftw_destroy_twiddle'
putils.c:(.text+0x627): undefined reference to `fftw_destroy_twiddle'
putils.c:(.text+0x657): undefined reference to `fftw_destroy_twiddle'
putils.c:(.text+0x667): undefined reference to `fftw_destroy_twiddle'
../fftw/.libs/libdfftw.a(rader.o): In function `fftw_twiddle_rader':
rader.c:(.text+0x228): undefined reference to `fftw_executor_simple'
rader.c:(.text+0x479): undefined reference to `fftw_executor_simple'
../fftw/.libs/libdfftw.a(rader.o): In function `fftwi_twiddle_rader':
rader.c:(.text+0x778): undefined reference to `fftw_executor_simple'
rader.c:(.text+0x9c9): undefined reference to `fftw_executor_simple'
../fftw/.libs/libdfftw.a(rader.o): In function `fftw_make_node_rader':
rader.c:(.text+0xc14): undefined reference to `fftw_create_twiddle'
rader.c:(.text+0xe9c): undefined reference to `fftw_executor_simple'
make[3]: *** [fftw_test] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory
`/home/lucas/amber11_prueba/AmberTools/src/fftw-2.1.5/tests'
make[2]: *** [install-recursive] Error 1
make[2]: Leaving directory
`/home/lucas/amber11_prueba/AmberTools/src/fftw-2.1.5'
make[1]: *** [-ldfftw] Error 2
make[1]: Leaving directory `/home/lucas/amber11_prueba/AmberTools/src/rism'
make: *** [serial] Error 2
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Received on Wed Jan 04 2012 - 08:30:02 PST
