Dear AmberUsers,
I want some type of clarification regarding the simulation replication.
Suppose, I have done 3 independent 10 ns simulation using the same starting
structure but different ig value (random seed number). Would i call this a
30ns simulation and plot the results (rmsd) on a 30ns scale or should i
call it as a 10ns simulation and plot the results on a 10 ns scale.
Independent replication simulation essentially means to explore more
solution space and thus can it be called a 30ns simulations.
Thanks and Regards,
Kanika Singal
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Received on Mon Dec 26 2011 - 03:00:02 PST
