[AMBER] dihedral analysis

From: Shirin Jamshidi <shirinjamshid.yahoo.com>
Date: Mon, 19 Dec 2011 09:05:55 -0800 (PST)

Dear Mam/Sir

How could I consider just the waters molecules within the distance of 1 angstrom around the ligang.
Is th below commands correct?

donor mask :ligandname <:5.0 & :WAT.O
acceptor mask :ligandname <:3.0 & :WAT.O :WAT.H1
acceptor mask :ligandname <:3.0 & :WAT.O :WAT.H2

Best

Shirin Jamshidi
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Received on Mon Dec 19 2011 - 09:30:03 PST
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