Re: [AMBER] MMTSB

From: case <case.biomaps.rutgers.edu>
Date: Sat, 17 Dec 2011 10:04:44 -0500

On Sat, Dec 17, 2011, fatahiya wrote:

> i'm trying to use MMTSB TOOLSET in order to do clustering
> analysis. Now, i'm doing Amber tutorial 3 section six.
> I got an error when to execute the fix_numbering_pdb.csh
>
> I got the error which stated below:
>
> ls: cannot access *.pdb.????: No such file or directory

It sounds like one of the previous steps may not have worked correctly Do
you have these pdb files in your current working directory? If not, can
you try to see why they were not created?

[Developers: this tutorial should be using ptraj or cpptraj.]

...good luck....dac


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Received on Sat Dec 17 2011 - 07:30:03 PST
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