Hello all,
is anyone aware of how to add/label axes in a 2D RMS plot? It seems like
this command has fallen out of favor lately, but I find it very useful.
For some reason this section was omitted from the AMBER9 manual.
The input I'm using is:
trajin mdall.mdcrd 1 20000 10
>
2drms out 2drms.ps ps mass :1-4 time 1.0
>
Unfortunately, the axes aren't labeled in the post-script file like they
are with the more commonly used "rms" command.
Also, the numbers in the file:
0.8307 fillbox
> 1.2500 inch 1.3970 inch box
> 0.9114 fillbox
> 1.2500 inch 1.4000 inch box
> 0.7119 fillbox
> 1.2500 inch 1.4030 inch box
> 0.6622 fillbox
> 1.2500 inch 1.4060 inch box
> 0.6858 fillbox
> 1.2500 inch 1.4090 inch box
> 0.7613 fillbox
> 1.2500 inch 1.4120 inch box
> 0.6574 fillbox
> 1.2500 inch 1.4150 inch box
> 0.6513 fillbox
> 1.2500 inch 1.4180 inch box
>
don't appear to match the RMSD, which should be around 6 Angstroms. What
do these numbers mean?
your response is greatly appreciated!
-Dave
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Received on Mon Dec 12 2011 - 16:00:02 PST
