On Tue, Nov 29, 2011, Yun Shi wrote:
>
> I understand that for "SSBOND", we need to manually change residue names to
> "CYX". So I am wondering if AmberTools1.5 will correctly add hydrogens to
> make some amino acids into cis conformation, as specified by the PDB file
> "CISPEP" records. Or do we need to some additional manipulation like in the
> case of disulfide bond?
I don't know the answer. Why don't you try it and see what happens?.....dac
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Received on Tue Nov 29 2011 - 10:30:03 PST
