Hi everyone,
I understand that for "SSBOND", we need to manually change residue names to
"CYX". So I am wondering if AmberTools1.5 will correctly add hydrogens to
make some amino acids into cis conformation, as specified by the PDB file
"CISPEP" records. Or do we need to some additional manipulation like in the
case of disulfide bond?
Thanks,
Yun
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Received on Tue Nov 29 2011 - 09:00:03 PST
