Dear David,
Thank you very much for answering.
I attach a log file of the recompilation of leap by using "make --debug" .
I did not notice any special issues in this log... the compilation works
just fine but when running I get the errors pointed in my previous enail ...
I also compiled with gcc 4.3 (instead of the default gcc 4.6) but I got
the same behavior.
It would be nice if somebody else using openSUSE 12.1 could tell if
he/she has a functional xleap...
Best wishes
Vlad
On 11/29/2011 03:48 PM, David A Case wrote:
> On Mon, Nov 28, 2011, Vlad Cojocaru wrote:
>> I have recently compiled AMBER 11 + AT 1.5 on my new openSUSE 12.1 OS on
>> a x86_64 linux machine. Everything went smoothly and tests were successful.
>> However, I have a new problem when running xleap. I get the error below
>> while executing the $AMBERHOME/bin/xleap exec.
>>
>> the glibc version is 2.14.1. The compiler is gnu 4.6.2.
>> I: Adding /usr/local/apps/amber/11-1.5/dat/leap/prep to search path.
>> -I: Adding /usr/local/apps/amber/11-1.5/dat/leap/lib to search path.
>> -I: Adding /usr/local/apps/amber/11-1.5/dat/leap/parm to search path.
>> -I: Adding /usr/local/apps/amber/11-1.5/dat/leap/cmd to search path.
>> *** glibc detected *** /usr/local/apps/amber/11-1.5/bin/xaLeap: free():
>> invalid pointer: 0x00007f90b265d010 ***
> Note that this doesn't necessarily mean you have glibc error. But I can't
> think of anyway to find the problem beyond compiling with debugging turned
> on. Maybe someone on the list is using openSUSE 12.1 and will be able to
> help (or maybe just be able to say "it works for me").
>
> ....dac
>
>
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>
--
Dr. Vlad Cojocaru
Max Planck Institute for Molecular Biomedicine
Department of Cellular and Developmental Biology
Roentgenstrasse 20
48149 Muenster, Germany
tel: +49-251-70365-324
fax: +49-251-70365-399
email: vlad.cojocaru[at]mpi-muenster.mpg.de
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Received on Tue Nov 29 2011 - 07:30:03 PST
