[AMBER] running of the sander in background in parallel state

From: leila karami <karami.leila1.gmail.com>
Date: Sun, 27 Nov 2011 15:00:09 +0330

Dear amber users

I study TUTORIAL A6.

I want to do section of [mpirun -np 2 $AMBERHOME/exe/sander.MPI -ng 2
-groupfile model_step1.group] in background.


I know, in serial state of amber,

The ampersand will background the job. for example

$AMBERHOME/exe/sander -O -i min.in -o min_protein.out -p
protein.prmtop -c protein.inpcrd -r protein_min.crd &

I did 2 states:

1) mpirun -np 2 $AMBERHOME/exe/sander.MPI -ng 2 -groupfile model_step1.group &

2) in model_step1.group file, I put & in the end

unfortunately, none of them were not true.

please guide me about that.

best regards.

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Received on Sun Nov 27 2011 - 04:00:02 PST
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