These are expected. The end of the log of AT15_Amber11.py says this:
NOTE: Because PBSA has changed since Amber 11 was released, some
tests are known to fail and others are known to quit in error. These
can be safely ignored.
Tests that error: Tests in $AMBERHOME/test/sander_pbsa_frc
Run.argasp.min Run.dadt.min Run.dgdc.min
Run.lysasp.min Run.polyALA.min Run.polyAT.min
Run.argasp.min Run.dadt.min Run.dgdc.min
Run.lysasp.min Run.polyALA.min Run.polyAT.min
Run.argasp.min Run.dadt.min Run.dgdc.min
Run.lysasp.min Run.polyALA.min Run.polyAT.min
Tests that produce possible FAILUREs:
cd sander_pbsa_ipb2 && ./Run.110D.min
cd sander_pbsa_lpb && ./Run.lsolver.min (only some of them fail here)
cd sander_pbsa_tsr && ./Run.tsrb.min
cd sander_pbsa_decres && ./Run.pbsa_decres
mm_pbsa.pl tests 02, 03, and 05
HTH,
Jason
On Wed, Nov 23, 2011 at 4:16 AM, co nguyentruong <nguoithamdo.gmail.com>wrote:
> Sorry all, i forgot to attach logs file.
>
>
> On Wed, Nov 23, 2011 at 4:14 PM, co nguyentruong <nguoithamdo.gmail.com
> >wrote:
>
> > Dear
> >
> > we set up serial and parallel of two Amber11 versions in rock 5.4 and
> > compiler is gcc-4-4 and use mpich for parallel installation . The first
> one
> > is version of Amber 11 and AmberTool 1.4 and second one is Amber11 and
> > AmberTool 1.5. Their names are Amber1114 and Amber11_1.5 respectively.
> > However, while almost of tests of Amber1114 got one possible failure,
> > Amber11_1.5 got more possible failures. I attached log file of their test
> > on our cluster. And some users bothered that my amber set up is not
> > reliable. Should we use these installation for running ?
> >
> > Thank you very much
> >
> > Nguyen Truong Co
> >
> > Institute for Computational Science and Technology
> >
> > Ho Chi Minh City Viet Nam
> >
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Wed Nov 23 2011 - 22:30:02 PST
