Below is the message that came blank for some reason to the list ...
Sorry
On 11/22/2011 08:11 PM, Vlad Cojocaru wrote:
> Hi Jason,
>
> Thanks a lot for the clarifications ...
> However there is another problem ... "make install" in
> $AMBERHOME/AmberTools/src exits with an error because is not able to
> find a libnetcdf.a file in $AMBERHOME/lib ...
>
> The configure script deposits the netcdf libs in
> $AMBERHOME/AmberTools/lib64 ...
>
> I noticed that the structure with "lib64" is specific to Amber Tools
> 1.5 (I do not have any lib64 directory in my old compilation of Amber
> 11 with At 1.4)
>
> I could link the netcdf libs to be available from $AMBERHOME/lib but I
> am wondering if there are other such inconsistancies and where they
> are coming from ....
>
> If you know a better solution, please let me know
>
> Best and thanks a lot for the help with this
> Vlad
>
>
> On 11/22/2011 07:26 PM, Jason Swails wrote:
>>
>>
>> On Nov 22, 2011, at 11:02 AM, Vlad
>> Cojocaru<vlad.cojocaru.mpi-muenster.mpg.de> wrote:
>>
>>> Ok .. I'll try it. What about MMPBSA.py ? Will this still work by using
>>> the system python ?
>> It should. As long as the system python is at least 2.4 and at most
>> 2.7, but that is almost always true.
>>
>>> Also, is the requirement to run the AT*py script before compiling AMBER
>>> 11 still valid ?
>> The latest patches will run that script for you at the end of
>> configure. If it does that, it will print a message telling you so at
>> the end. If this is the case, you will not have to run it yourself.
>>
>> HTH,
>> Jason
>>
>>
>> --
>> Jason M. Swails
>> Quantum Theory Project,
>> University of Florida
>> Ph.D. Candidate
>> 352-392-4032
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
--
Dr. Vlad Cojocaru
Max Planck Institute for Molecular Biomedicine
Department of Cellular and Developmental Biology
Roentgenstrasse 20
48149 Muenster, Germany
tel: +49-251-70365-324
fax: +49-251-70365-399
email: vlad.cojocaru[at]mpi-muenster.mpg.de
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Received on Tue Nov 22 2011 - 11:30:03 PST
