[AMBER] MMPBSA.py: DELTA section missing in FINAL_DECOMP_MMPBSA.dat for dec_verbose=3

From: Jan-Philip Gehrcke <jgehrcke.googlemail.com>
Date: Fri, 04 Nov 2011 17:47:32 +0100

Huhu,

once again me. Sorry :)

I've performed two equivalent MMPBSA.py.MPI runs. One with

dec_verbose=0

and one with

dec_verbose=3

In both cases, the DELTA section was not written in
FINAL_DECOMP_MMPBSA.dat. But only in the first case, this message is
printed to FINAL_DECOMP_MMPBSA.dat:

"DELTAs can only be printed with the default mask assignments"

I am wondering if these lines:

> if ligstart == -1 and verbose <= 2 and not stability:
> output.write("DELTAs can only be printed with the default mask
assignments\n\n")
> verbose += 2

in AmberTools/src/mmpbsa_py/MMPBSA_mods/amberoutputs.py really make
sense (especially the condition `verbose <= 2`). Do they? :)

Thanks,

Jan-Philip

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Received on Fri Nov 04 2011 - 10:00:02 PDT
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