[AMBER] Creating i-motif (cruciform DNA) using NAB??

From: raghav singh <raghavbioinfo.gmail.com>
Date: Wed, 2 Nov 2011 19:17:46 +0100

Hello all,

I am running molecular dynamics of i-motif DNA *(225D , rcsb code). i want
to prepare a longer structure of the same.
because this structure is quite different in case of per base pair backbone
tilt and rise up.... I have tried a lot of molecular modeling tools but I
am not able to produce a larger structure of the same.like 200 bp
quadruple.
can anyone provide me some insights and help... how can I make it.

Thank You all

Raghav
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Received on Wed Nov 02 2011 - 11:30:03 PDT
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