Dear Amber users/developers,
I have run into some problems when I used pmemd and pmemd.MPI to run a
simulation. And the error messages are as below. May I ask how I could solve
this problem? Thank you very much!
chen.sugar9:~/celf-lbox/celf-bglc$ ./test
forrtl: severe (19): invalid reference to variable in NAMELIST input, unit
5, file /home/chen/celf-lbox/celf-bglc/celfbglc_prod_3.in, line 5, position
17
Image PC Routine Line
Source
libintlc.so.5 00007F38E335AF7A Unknown Unknown Unknown
libintlc.so.5 00007F38E3359AF5 Unknown Unknown Unknown
libifcore.so.5 00007F38E429C1F2 Unknown Unknown Unknown
libifcore.so.5 00007F38E42115FB Unknown Unknown Unknown
libifcore.so.5 00007F38E4210D0E Unknown Unknown Unknown
libifcore.so.5 00007F38E4252E52 Unknown Unknown Unknown
pmemd 00000000005A84B2 Unknown Unknown Unknown
pmemd 00000000004ED11E Unknown Unknown Unknown
pmemd 00000000004EC109 Unknown Unknown Unknown
pmemd 0000000000402E2C Unknown Unknown Unknown
libc.so.6 00007F38E2FD5EFF Unknown Unknown Unknown
pmemd 0000000000402D29 Unknown Unknown Unknown
chen.sugar9:~/celf-lbox/celf-bglc$ ./test
forrtl: severe (19): invalid reference to variable in NAMELIST input, unit
5, file /home/chen/celf-lbox/celf-bglc/celfbglc_prod_3.in, line 5, position
17
Image PC Routine Line
Source
libintlc.so.5 00007F596B17BF7A Unknown Unknown Unknown
libintlc.so.5 00007F596B17AAF5 Unknown Unknown Unknown
libifcore.so.5 00007F596C0BD1F2 Unknown Unknown Unknown
libifcore.so.5 00007F596C0325FB Unknown Unknown Unknown
libifcore.so.5 00007F596C031D0E Unknown Unknown Unknown
libifcore.so.5 00007F596C073E52 Unknown Unknown Unknown
pmemd.MPI 000000000062278F Unknown Unknown Unknown
pmemd.MPI 000000000050EF19 Unknown Unknown Unknown
pmemd.MPI 0000000000508B99 Unknown Unknown Unknown
pmemd.MPI 000000000042031C Unknown Unknown Unknown
libc.so.6 00007F596ADF6EFF Unknown Unknown Unknown
pmemd.MPI 0000000000420219 Unknown Unknown Unknown
--------------------------------------------------------------------------
mpirun has exited due to process rank 0 with PID 23582 on
node sugar9 exiting without calling "finalize". This may
have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------
Best,
Mo Chen
Graduate Student
120 Stocking Hall
Cornell University
Ithaca, NY 14850
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Received on Thu Oct 13 2011 - 12:30:02 PDT
