Use ptraj. See the AmberTools manual for instructions on how to use the
trajin, RMS, and average commands to do what you want.
HTH,
Jason
On Wed, Oct 12, 2011 at 10:13 AM, najmul arfin <syednajmularfin.gmail.com>wrote:
> dear users,
> i have a MD run for 1500 ps. Now, i want to average my structure from 700
> ps- 1500 ps .
> So, *how to extract trajectory (700ps-1500ps), and what is the procedure to
> average the structure.*
>
>
>
> --
> NAJMUL ARFIN
> Research Scholar
> SCHOOL OF PHYSICAL SCIENCES,
> JAWAHARLAL NEHRU UNIVERSITY,
> NEW DELHI -110067
> +919910040525
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Wed Oct 12 2011 - 11:00:06 PDT
