Dear Carmen,
This is a problem with recent changes in the configure script in $AMBERHOME/AmberTools/src/ which creates a symbolic link of the configuration file config.h in $AMBERHOME/src. DOS cannot deal with this symbolic link, instead a copy is required to be able to compile the native Windows version of pmemd in a DOS shell.
bugfix.11 for AmberTools 1.5 fixes this problem.
Please download bugfix.11 and apply it as instructed on the AmberTools bugfix webpage (
http://ambermd.org/bugfixesat.html). As a temporary workaround you can also manually make a copy in the cygwin shell:
CYGWIN> cd $AMBERHOME/src
CYGWIN> rm config.h
CYGWIN> cp $AMBERHOME/AmberTools/src/config.h .
All the best,
Andy
On Jul 22, 2011, at 4:53 PM, Carmen Di Giovanni wrote:
> Dear list,
> I'm trying to istall PMEMD in serial version on Win7 64 bit.
> http://ambermd.org/mswindows.html
>
> After command:
> DOS> make serial_win (GNU make executable)
>
> The error is the following:
> config.h:1:***missing separator. Stop.
>
> Can you help me?
> Carmen
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
Dr. Andreas W. Goetz
San Diego Supercomputer Center
Tel : +1-858-822-4771
Email: agoetz.sdsc.edu
Web : www.awgoetz.de
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Received on Wed Jul 27 2011 - 08:30:03 PDT
