the ff99SB force field was not directly developed with a cutoff or switch,
but it's likely that the water model you are using was indeed developed with
such things in mind and you should use the options that are appropriate for
that model or you may get quite incorrect results.
On Tue, Jul 19, 2011 at 7:42 AM, Madhurima Jana <tinni.217.gmail.com> wrote:
> Hi all,
>
> I want perform atomistic MD simulation of an aqueous solution of protein
> using AMBER ff99SB forcefield and NAMD simulation code. In that case shall
> I
> use *switching on *?
>
> Any suggestion is highly be appreciated.
>
> Thanks in advance,
> Madhurima
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Received on Tue Jul 19 2011 - 08:30:05 PDT
