i did this with nab.
*molecule m;
m = bdna("tatatatatatatatatatatatatatatatata");
*
*putpdb("ta_34.pdb", m);*
the output:
ATOM 1 HO5' DT5 A 1 -0.443 -8.367 -1.903 1.00 0.00
ATOM 2 O5' DT5 A 1 0.401 -8.012 -1.614 1.00 0.00
ATOM 3 C5' DT5 A 1 1.429 -7.769 -2.593 1.00 0.00 ......
i had wanted the form of pdb file to contain "EIC" instead of "DT5, etc" in
the corresponding column. how do i do that cos i want to use the output file
in "antechamber" to do something like this:
*antechamber -i eic_clean1.pdb -fi pdb -o eic_clean1.mol2 -fo mol2 -c bcc -s
2
*
*parmchk -i eic_clean1.mol2 -f mol2 -o eic_clean1.frcmod*
thank you.
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Received on Tue Jul 12 2011 - 11:30:02 PDT
