Re: [AMBER] ERROR - No pdb file generated using NAB

From: case <>
Date: Sat, 9 Jul 2011 09:14:49 -0400

On Sat, Jul 09, 2011, Andre Serobian wrote:

> even the following tutorial file from the Amber site does not produce a pdb file:
> molecule m;
> m = fd_helix( "abdna", "aaaaaaaaaa", "dna" );
> putpdb( "nuc.pdb", m, "-wwpdb");

Just to double check, make sure the test suite for NAB is all failing; there
is a test case there that is just like the above script. This will just
ensure that you aren't making some odd mistake, like invoking the wrong
version of nab. Is there any output at all? If you add a print
statement to your code does it print that?

Assuming that your nab installation is faulty, run a "make clean" followed
by a configure and "make nabonly". Look for error messages. If you need
help, but sure to tell us the OS and compiler versions you are using, results
of the compile process and test suite output.


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Received on Sat Jul 09 2011 - 06:30:04 PDT
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