Hi all:
I am compiling amber 11 in Debian using gnu (gcc version 4.3.2 (Debian
4.3.2-1.1)) compiler. I am just a user and do not have rights of root.
Serial version is compiled well, I have some problem in compiling parallel
version, basically its problem with openmpi. To install openmpi I am using
fallowing script, as suggested in the manual.
./configure_openmpi gnu
I tried both openmpi-1.4.1 and openmpi-1.4.3 but both are producing two
different error. From openmpi-1.4.3, I am getting the fallowing error
message
/bin/sh ../../../../libtool --tag=CC --mode=link gcc -O3 -DNDEBUG
-finline-functions -fno-strict-aliasing -pthread -fvisibility=hidden -module
-avoid-version -L/software/torque-2.4/lib -Wl,--rpath
-Wl,/software/torque-2.4/lib -export-dynamic -o mca_plm_tm.la -rpath
/home/sushil/amber11/AmberTools/lib/openmpi plm_tm_component.lo
plm_tm_module.lo -ltorque -lnsl -lutil -lm
/bin/grep: /usr/lib/libgssapi.la: No such file or directory
/bin/sed: can't read /usr/lib/libgssapi.la: No such file or directory
libtool: link: `/usr/lib/libgssapi.la' is not a valid libtool archive
make[2]: *** [mca_plm_tm.la] Error 1
make[2]: Leaving directory
`/home/sushil/amber11/AmberTools/src/openmpi-1.4.3/orte/mca/plm/tm'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory
`/home/sushil/amber11/AmberTools/src/openmpi-1.4.3/orte'
make: *** [install-recursive] Error 1
Can any of you please suggest me that whats going wrong ?
Regards.
..mish
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Jul 05 2011 - 09:30:06 PDT
