[AMBER] Adding NH2 at the end of peptide

From: Esam Tolba <eatolba.gmail.com>
Date: Thu, 30 Jun 2011 12:51:55 +0200

Dear Amber User / Developer

i am using pdb file as an structure input for amber and i want to edit the
structure by adding NH2 at the end of peptide chain instead of one of the
two oxygen atoms at the carboxyle end of the chain.
the i tried to do it manually in pdb file but every time tleab will delete
the Nitrogen atom i added and fix the structure again to COO at the end of
the peptide.
so my question is how to add NH2 (amide group) at the carboxyle end of
peptide chain?

Best Regards,
*Esam Tolba *
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Received on Thu Jun 30 2011 - 04:00:03 PDT
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