Hi Lee,
When you closed the terminal and opened a new one you probably erased your
setting of the AMBERHOME environment variable. Try:
echo $AMBERHOME
and see if it is correct. If not then you need to export it again.
export AMBERHOME=/path/to/amber
Then hopefully things should work. You can avoid this step by adding this
export to your ~/.bashrc file so that it gets set for every terminal you
open.
All the best
Ross
> -----Original Message-----
> From: Sheau Chen Lee [mailto:sheauchenlee.gmail.com]
> Sent: Tuesday, June 28, 2011 8:23 PM
> To: amber.ambermd.org
> Subject: [AMBER] AMBER9- error in LEaP while learning MMPBSA tutorial
>
> Hi,
>
> I'm a beginner in AMBER and i'm using amber9. I accidentally close the
> terminal while i was doing amber advance tutorial for mm-pbsa and LEaP
> does
> not function well after that. Error occurred after the first command
> and
> hence i can't proceed to the next step.
>
> sclee.sclee-Satellite-L645:~$ > $AMBERHOME/exe/tleap -s -f
> $AMBERHOME/dat/leap/cmd/leaprc.ff99
> -s: command not found
> sclee.sclee-Satellite-L645:~$ com = loadpdb ras-raf.pdb
> No command 'com' found, but there are 18 similar ones
> com: command not found
>
>
> The error did not appear before the terminal closed. May i know what
> shall I
> do?
>
> Thank you very much.
>
> Lee.
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Received on Wed Jun 29 2011 - 02:30:03 PDT
