Attempted installation of amber10/ambertools1.2 on a new machine with
recent Debian GNU-Linux amd64 wheezy, gcc 4.6.1; gfortran 4.6.1 was
met with failure at ambertools1.2 installation step.
---Applied al bug fixes
--- ./configure_at gcc
reported no errors, while
make -f Makefile_at
cd mortsrc; make
make[2]: Entering directory `/usr/local/amber10/src/gleap/mortsrc'
cd common;make
make[3]: Entering directory `/usr/local/amber10/src/gleap/mortsrc/common'
g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o
fortran.o fortran.cpp
fortran.cpp: In function ‘void mort::write_ivalue(std::ostream&, const
string&, const boost::any&)’:
fortran.cpp:19:46: error: ‘sprintf’ was not declared in this scope
fortran.cpp: In function ‘void mort::write_dvalue(std::ostream&, const
string&, const boost::any&)’:
fortran.cpp:36:46: error: ‘sprintf’ was not declared in this scope
fortran.cpp: In function ‘void mort::write_svalue(std::ostream&, const
string&, const boost::any&)’:
fortran.cpp:52:54: error: ‘sprintf’ was not declared in this scope
fortran.cpp: In member function ‘void mort::format::write(std::ostream&) const’:
fortran.cpp:133:31: warning: comparison between signed and unsigned
integer expressions [-Wsign-compare]
fortran.cpp:138:42: warning: comparison between signed and unsigned
integer expressions [-Wsign-compare]
fortran.cpp:145:38: warning: comparison between signed and unsigned
integer expressions [-Wsign-compare]
fortran.cpp:153:39: warning: comparison between signed and unsigned
integer expressions [-Wsign-compare]
make[3]: *** [fortran.o] Error 1
make[3]: Leaving directory `/usr/local/amber10/src/gleap/mortsrc/common'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/usr/local/amber10/src/gleap/mortsrc'
make[1]: *** [sleap] Error 2
make[1]: Leaving directory `/usr/local/amber10/src/gleap'
make: *** [install] Error 2
**********************
May I ask whether the following suggestion on the web for Ubuntu
installations can be attempted in my case or if there is a better
suggestion that has escaped my attention:
xxxxxxxxxxxxxxxxxxxxxxxxxxx
Attempting to perhaps preempt your next question, I'm also using Ubuntu
9.10 on my desktop and I see the following.
<...snip....>
g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o
fortran.o fortran.cpp
fortran.cpp: In function ‘void mort::write_ivalue(std::ostream&, const
std::string&, const boost::any&)’:
fortran.cpp:19: error: ‘sprintf’ was not declared in this scope
<....failure....>
If so, add the following include (cstdio) to top of
./src/gleap/mortsrc/common/fortran.cpp
#include <cassert>
#include <iostream>
#include <stdexcept>
#include "fortran.hpp"
#include "algorithm.hpp"
so that it now reads:
#include <cassert>
#include <iostream>
#include <stdexcept>
#include <cstdio>
#include "fortran.hpp"
#include "algorithm.hpp"
I think the verion of g++ (part of the 4.4.1 gnu compiler set) shipped
with Ubuntu 9.10 has become stricter.
xxxxxxxxxxxxxxxxxxxxxxxxxx
Sorry to apply to older code the latest gcc/gfortran which gave also
problems for installation of recent ambertools 1.5 (other thread
today).
Thanks
francesco pietra
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Received on Mon Jun 20 2011 - 08:00:03 PDT
