Re: [AMBER] Nucleic residues with methylphosphonates

From: David Case <>
Date: Thu, 16 Jun 2011 21:40:41 -0400

On Jun 16, 2011, at 4:49 PM, Alexander Drozdetski <> wrote:

> Error: cannot run "$AMBERHOME/bin/sqm -O -i -o sqm.out" of bcc() in
> charge.c properly, exit

This just tells you there was an error. You need to look in the sqm.out file to get the information you need to figure out what the problem is. (We should change the antechamber message, since many users don't know what to do next when they see this message.)


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Received on Thu Jun 16 2011 - 19:00:04 PDT
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