---------- Forwarded message ----------
From: Sajeewa Pemasinghe <sajeewasp.gmail.com>
Date: Mon, Jun 13, 2011 at 6:48 PM
Subject: Interpreting the distance covariance matrix
To: amber.ambermd.org
Hi,
I have run a distance-covarinace analysis for 22 alpha carbon atoms
specified by the mask1. I thought I would get a 22 by 22 symmetric matrix
where the diagonal elements correspond to the variances. Instead I got a 231
by 231 symmetric matrix. I am having a very hard time interpreting this.
This is my first time running a distance covariance calculation in amber. I
would really appreciate if you could give me some helpful explanation in
interpreting the structure of 231 by 231 matrix.
Best Regards
Sajeewa
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Received on Tue Jun 14 2011 - 10:00:03 PDT
