Dear Jason,
I followed as your suggestion. However, the installation failed at further step (see message below).
Any suggestion please.
Thank you very much.
Xioling
========
...
ranlib libXtal.a
mv libXtal.a /softwares/amber11/lib
make[1]: Leaving directory `/softwares/amber11/AmberTools/src/xtalutil/Clibs'
(cd xtalutil/CPrograms/ && make install )
make[1]: Entering directory `/softwares/amber11/AmberTools/src/xtalutil/CPrograms'
icc -c -ip -O3 -axSTPW -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AddToBox.o AddToBox.c -I../Clibs/
AddToBox.c(122): (col. 3) remark: BLOCK WAS VECTORIZED.
AddToBox.c(275): (col. 3) remark: LOOP WAS VECTORIZED.
AddToBox.c(75): (col. 1) remark: main has been targeted for automatic cpu dispatch.
AddToBox.c(56): (col. 4) remark: LOOP WAS VECTORIZED.
AddToBox.c(45): (col. 1) remark: RunBGrid has been targeted for automatic cpu dispatch.
AddToBox.c(20): (col. 1) remark: PFrac has been targeted for automatic cpu dispatch.
icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AddToBox AddToBox.o /softwares/amber11/lib/libXtal.a -lm
/softwares/amber11/lib/libXtal.a(crdmanip.o)(.text+0x840): In function `ReImage.J':
: undefined reference to `__svml_floor2_mask'
/softwares/amber11/lib/libXtal.a(crdmanip.o)(.text+0x878): In function `ReImage.J':
: undefined reference to `__svml_ceil2_mask'
/softwares/amber11/lib/libXtal.a(crdmanip.o)(.text+0x8ba): In function `ReImage.J':
: undefined reference to `__svml_floor2'
/softwares/amber11/lib/libXtal.a(crdmanip.o)(.text+0x8e3): In function `ReImage.J':
: undefined reference to `__svml_ceil2'
make[1]: *** [AddToBox] Error 1
make[1]: Leaving directory `/softwares/amber11/AmberTools/src/xtalutil/CPrograms'
make: *** [serial] Error 2
>
> This sounds like a patch has been applied twice (an error that shouldn't
> crop up, really).
>
> Try extracting a fresh copy of AmberTools 1.5, reapplying the bugfix
> (once!), and compiling then.
>
> HTH,
> Jason
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Received on Tue Jun 14 2011 - 02:00:04 PDT
