Dear sir,
Thank you for your concern, is it enough if Ambertool 1.5 will successfully be installed in linux for running amber good ?
regards,
Souvik Sur
Ph. D. Student
Department Of Chemistry
University Of Delhi
India
> Date: Tue, 7 Jun 2011 09:11:36 -0600
> From: jason.swails.gmail.com
> To: amber.ambermd.org
> Subject: Re: [AMBER] Loadin AMBER9 in linux
>
> There's no need to use tleap from amber9 when you can install AmberTools 1.5
> (in which this bug is fixed) for free.
>
> HTH,
> Jason
>
> On Tue, Jun 7, 2011 at 4:54 AM, TH Chew <teonghan.gmail.com> wrote:
>
> > Hi,
> >
> > I posted the same problem yesterday and Jason replied. It is most likely a
> > bug related to 64bit OS. This morning, I manage to get it compile with test
> > running fine on a 32bit OS. Can you post what you have in test/ff94_prm.out
> > here?
> >
> > Thanks.
> >
> > On Tue, Jun 7, 2011 at 6:44 PM, souvik sur <souviksur.hotmail.com> wrote:
> >
> > >
> > > Dear sir,
> > >
> > > Here is the following error in test of "leap"
> > >
> > >
> > >
> > > [root.nis test]# make test.leap
> > > cd leap; ./Run.tleap
> > >
> > > Running leap tests on ./tleap -> ../../exe/teLeap
> > >
> > > building force field libraries:
> > >
> > > '91 ff..
> > >
> > > diffing ../../dat/leap/lib/all_amino91.lib with all_amino91.lib
> > > PASSED
> > > ==============================================================
> > > diffing ../../dat/leap/lib/all_aminoct91.lib with all_aminoct91.lib
> > > PASSED
> > > hello sir,
> > >
> > > Here is the following error :
> > >
> > > ==============================================================
> > > diffing ../../dat/leap/lib/all_aminont91.lib with all_aminont91.lib
> > > PASSED
> > > ==============================================================
> > > diffing ../../dat/leap/lib/all_nucleic91.lib with all_nucleic91.lib
> > > PASSED
> > > ==============================================================
> > > diffing ../../dat/leap/lib/ions91.lib with ions91.lib
> > > PASSED
> > > ==============================================================
> > >
> > > '94 ff..
> > >
> > > diffing ../../dat/leap/lib/all_amino94.lib with all_amino94.lib
> > > PASSED
> > > ==============================================================
> > > diffing ../../dat/leap/lib/all_aminoct94.lib with all_aminoct94.lib
> > > PASSED
> > > ==============================================================
> > > diffing ../../dat/leap/lib/all_aminont94.lib with all_aminont94.lib
> > > PASSED
> > > ==============================================================
> > > diffing ../../dat/leap/lib/all_nucleic94.lib with all_nucleic94.lib
> > > PASSED
> > > ==============================================================
> > > diffing ../../dat/leap/lib/ions94.lib with ions94.lib
> > > PASSED
> > > ==============================================================
> > >
> > > loadpdb and saveamberparm: 94 ff..
> > >
> > > ./Run.tleap: Program error in leap
> > > make: *** [test.leap] Error 1
> > >
> > >
> > >
> > > regards,
> > > Souvik Sur
> > > Ph. D. Student
> > > Department Of Chemistry
> > > University Of Delhi
> > > India
> > >
> > >
> > >
> > >
> > > > Date: Tue, 7 Jun 2011 18:11:23 +0800
> > > > From: teonghan.gmail.com
> > > > To: amber.ambermd.org
> > > > Subject: Re: [AMBER] Loadin AMBER9 in linux
> > > >
> > > > Hi Souvik,
> > > >
> > > > I actually come across this yesterday. Did you compile in a 64bit Linux
> > > OS?
> > > >
> > > > Thanks.
> > > >
> > > > On Tue, Jun 7, 2011 at 6:08 PM, souvik sur <souviksur.hotmail.com>
> > > wrote:
> > > >
> > > > >
> > > > >
> > > > > sir,
> > > > >
> > > > > Just now i have installed amber9 in linux but when i run make
> > > > > "test.serial",there showed an error in loading "leap":
> > > > > loadpdb and saveamberparm: 94 ff..
> > > > >
> > > > > ./Run.tleap: Program error in leap
> > > > > make: *** [test.leap] Error 1
> > > > >
> > > > >
> > > > > what can I do for it?
> > > > >
> > > > > regards,
> > > > > Souvik Sur
> > > > > Ph. D. Student
> > > > > Department Of Chemistry
> > > > > University Of Delhi
> > > > > India
> > > > >
> > > > >
> > > > >
> > > > > _______________________________________________
> > > > > AMBER mailing list
> > > > > AMBER.ambermd.org
> > > > > http://lists.ambermd.org/mailman/listinfo/amber
> > > > >
> > > >
> > > >
> > > >
> > > > --
> > > > Regards,
> > > > THChew
> > > > _______________________________________________
> > > > AMBER mailing list
> > > > AMBER.ambermd.org
> > > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> >
> >
> >
> > --
> > Regards,
> > THChew
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Jun 07 2011 - 10:30:05 PDT
