Re: [AMBER] AmberTools 1.5 installation problem

From: Daniel Roe <>
Date: Thu, 2 Jun 2011 07:45:59 -0400


The test failures seem to all be related to either Sleap (which seems
to be simple round-off error, and probably is OK) or chamber/dfhr. If
you don't use either of these programs you're probably ok, though it's
unclear why the errors are occurring.

Can you be more descriptive as to what failed when you used the gnu
compilers (maybe post the error messages?). Also post your OS/Version
(e.g. Fedora Core 14 x64) and the version of compilers you are using.
Also, what were the errors you observed when compiling with intel


On Thu, Jun 2, 2011 at 7:22 AM, Siavoush Dastmalchi
<> wrote:
> Dear List,
> I was trying to install AmberTools 1.5, but have faced with couple of problem. I have downloaded it from and then copied the bugfix.all patch to $AMBERHOME directory. Then I did all the steps as instructed in the manual. First time I used gnu compilers but it failed, then I used intel compilers. It didn't finish without error but was much much better. When I performed the test, in majority of the cases the test passed and at the end I got the following lines showing that there are some problems.
> make[1]: Target `test.serial' not remade because of errors.
> make[1]: Leaving directory `/home/amber11/amber11/AmberTools/test'
> 469 file comparisons passed
> 17 file comparisons failed
> 28 tests experienced errors
> Test log file saved as logs/test_at_serial/2011-06-01_04-34-36.log
> Test diffs file saved as logs/test_at_serial/2011-06-01_04-34-36.diff
> I have attached the log and diffs files just in case.
> I will appreciate your valuable help.
> Regards,
> Siavoush
> _______________________________________________
> AMBER mailing list

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Received on Thu Jun 02 2011 - 05:00:02 PDT
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