To avoid all of this, I would just use NetCDF trajectories :).
Uncompressed, formatted trajectories gave problems before AmberTools 1.4
patch level 16 (as Bill said), but NetCDF trajectories are so so much better
in every way that it's almost never worth using ASCII trajectory files
anymore.
All the best,
Jason
On Fri, Apr 29, 2011 at 6:21 AM, juzer stationwala <juzer.niper.gmail.com>wrote:
> I too faced similar problem but was solved when using compressed trajectory
> file.
>
> use gzip command to compress your trajectory file then use it in ptraj.
>
> even if you want to combine two trajectories I would suggest to have out
> put
> in mdcrd.gz form & then you may uncompress it by command line & visualise
> it
> using VMD
>
> --
> Warm Regards:
>
> Juzer Stationwala,
> Dept. of Pharmacoinformatics,
> National Institute of Pharmaceutical Education & Research
> (NIPER)
> Mohali,
> Punjab.
> India
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Fri Apr 29 2011 - 05:30:06 PDT
