Trying to build amber11 (patched with current bugfix.all) with
AmberTools-1.5 (on an AMD64-bit machine running Ubuntu 10.04) I
encounter errors, summarized here, and documented with compilation
excerpts copied below.
1) Running `./configure gnu` (in $AMBERHOME/AmberTools/src) was
apparently successful.
2) `make install` reports errors in the Python-2.6.6 module, having to
do with unicode syntax. Two excerpts from `make` output are copied below.
3) If I nonetheless proceed with executing AT15_Amber11.py, it fails,
due to failures to import "site" and "os" (which probably has nothing to
do with the unicode syntax errors.
Can anyone point the way out of this problem?
Thanks,
Bob Wohlhueter
**********************************************************************************************
The configuration file, config.h, was successfully created.
The next step is to type 'make install'
NOTE: after installing AmberTools, if you want to compile
Amber11 using AmberTools 1.5, you must run the
AT15_Amber11.py script first, e.g.:
cd /usr/local/lib/amber11; ./AT15_Amber11.py; make serial
(See the Amber11 Users' Manual for full instructions,
and be sure to have a backup, since the AT15_Amber11.py
script will modify your Amber11 files.)
.
.
.
Compiling
/usr/local/lib/amber11/lib/python2.6/json/tests/test_separators.py ...
Compiling
/usr/local/lib/amber11/lib/python2.6/json/tests/test_speedups.py ...
Compiling
/usr/local/lib/amber11/lib/python2.6/json/tests/test_unicode.py ...
SyntaxError: ("(unicode error) \\N escapes not supported (can't load
unicodedata module)",
('/usr/local/lib/amber11/lib/python2.6/json/tests/test_unicode.py', 8,
None, "u = u'\\N{GREEK SMALL LETTER ALPHA}\\N{GREEK CAPITAL LETTER
OMEGA}'\n"))
Compiling /usr/local/lib/amber11/lib/python2.6/json/tool.py ...
Compiling /usr/local/lib/amber11/lib/python2.6/keyword.py ...
....
Compiling /usr/local/lib/amber11/lib/python2.6/test/test_modulefinder.py ...
Compiling
/usr/local/lib/amber11/lib/python2.6/test/test_multibytecodec.py ...
SyntaxError: ("(unicode error) \\N escapes not supported (can't load
unicodedata module)",
('/usr/local/lib/amber11/lib/python2.6/test/test_multibytecodec.py',
229, None, "self.failIf('\\x0e' in u'\\N{SOFT
HYPHEN}'.encode('iso-2022-jp-2'))\n"))
Compiling
/usr/local/lib/amber11/lib/python2.6/test/test_multibytecodec_support.py ...
Compiling /usr/local/lib/amber11/lib/python2.6/test/test_multifile.py ...
.
.
.
**************************************************************************
root.winter-linux: ...lib/amber11 (97%)# ./AT15_Amber11.py
./AT15_Amber11.py
'import site' failed; use -v for traceback
Traceback (most recent call last):
File "./AT15_Amber11.py", line 8, in <module>
import os, sys
ImportError: No module named os
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Received on Thu Apr 28 2011 - 13:00:03 PDT
