[AMBER] Steered MD at constant force

From: Ali M. Naserian-Nik <naseriannik.gmail.com>
Date: Thu, 28 Apr 2011 16:25:23 +0330

Hi all,


I know that currently SMD simulations at constant force are not directly
possible in AMBER. Dr. Roitberg, in one of his emails to the Mail Reflector,
has explained very briefly a method for pulling with constant force. Here is
his explanation: �You can have a moving center if you want to apply a
constant velocity pull, or user the ends of the flatwell restraint to fake
constant force pullings (Thanks to Dan Roe for this last insight!).� Could
you please help to clear the method that has been suggested by Dr. Roitberg
or other suitable methods, in details, for constant force pulling?

 Thank you very much,

Ali
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Received on Thu Apr 28 2011 - 06:00:04 PDT
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