Dear Amber users,
Now I want to calculate the B-factor of a protein for the last 10ns MD, I use this command in the ptraj.in:
atomicfluct out bfactor_chcl31.out .CA,C,N start 10001 stop 15000 byres bfactor
Is it right? because the figure is so strange for me. And if I want to get the Hydrophobic surface change vs time ,What syntax should I use ?
Thanks,
Regards!
Yuan
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Received on Tue Apr 26 2011 - 06:30:04 PDT
