try to go through this tutorial from bevan's lab
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/umbrella/index.html
hope this will help
On Tue, Apr 19, 2011 at 9:10 PM, Elisa Frezza <elisa.frezza.gmail.com>wrote:
> Dear All
>
> I would like to calculate the PMF between two peptide as a function of
> peptide separation, but I do not understand how to do.
>
> Thank you in advance
>
> Elisa Frezza
>
> --
> Elisa Frezza
> Ph.D. Student in Material Science and Engineering
> Dipartimento di Scienze Chimiche
> Università di Padova
> via Marzolo, 1
> 35131 Padova - Italy
> Phone: +39 049 827 5149
> Emai: elisa.frezza.gmail.com
> elisa.frezza.studenti.unipd.it
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Received on Tue Apr 19 2011 - 22:00:02 PDT
