Re: [AMBER] Can i addIons F- Br- I- using AMBER 9

From: David A Case <case.biomaps.rutgers.edu>
Date: Mon, 18 Apr 2011 08:04:04 -0400

On Mon, Apr 18, 2011, MD wrote:

> I'd like to add ions to water, using the following command,
>
> a= SPCBOX
> I want the ions randomly packed in the water box, how can i achieve this purpose?

The recommended approach is to choose a single water molecule as the "solute",
then use solvateBox and addIons to prepare the simulation.

....good luck...dac


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Apr 18 2011 - 05:30:03 PDT
Custom Search