Hi,
the default value of closeness is 1, i hope its specification is not
mandatory, however i have always stated this option.
On Mon, Apr 18, 2011 at 4:16 PM, Bala subramanian <bala.biophysics.gmail.com
> wrote:
> Thank you for the response. But what is the default value of this closeness
> arguement, is it mandatory to specify it ?
>
> Thanks,
> Bala
>
> On Mon, Apr 18, 2011 at 12:34 PM, Kshatresh Dutta Dubey <
> kshatresh.gmail.com
> > wrote:
>
> > Dear Bala,
> >
> > nice to see u. Actually, closeness argument signifies how far two
> > water/solvent molecules are. The smaller value of closeness will result
> > more
> > concentration of wat/solvent.
> > On Mon, Apr 18, 2011 at 3:53 PM, Bala subramanian <
> > bala.biophysics.gmail.com
> > > wrote:
> >
> > > Friends,
> > > I use the following syntax to solvate my solute. I would like to know
> > what
> > > is the use/significance of the closeness arguement in solvateoct
> command.
> > > Kindly enlighten me on the same.
> > >
> > > solvateoct a TIP3PBOX 15.0
> > >
> > > Regards,
> > > Bala
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> >
> >
> >
> > --
> >
> >
> **************************************************************************************************************************
> > Kshatresh Dutta Dubey
> > Senior Research Fellow (SRF)
> > Biophysics Unit,
> > Department of Physics
> > DDU Gorakhpur University
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
**************************************************************************************************************************
Kshatresh Dutta Dubey
Senior Research Fellow (SRF)
Biophysics Unit,
Department of Physics
DDU Gorakhpur University
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Apr 18 2011 - 04:00:05 PDT
