[AMBER] NEB calculations in enzyme?

From: Mahmoud Soliman <mahmoudelkot.gmail.com>
Date: Sun, 17 Apr 2011 17:49:58 +0200

   Dear Users,
   I wonder can I do NEB calculations to find the lowest energy path between
   two points (Reactant and product) for a reaction happens between a ligand
   and enzyme using QM/MM approach? or that would be difficult due the fact
   that in enzymes there will be thousands of degrees of freedom. If my guess
   is true, is there any alternative to do a simple QM/MM potential energy
   surface? any tutorial on that?
   Best wishes
   Mahmoud
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Received on Sun Apr 17 2011 - 09:00:02 PDT
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