Re: [AMBER] Add charges to a prmtop files before simulations

From: David A Case <case.biomaps.rutgers.edu>
Date: Thu, 14 Apr 2011 14:03:05 -0400

On Thu, Apr 14, 2011, Baptiste Legrand wrote:

> Thanks. I have separated my initial mol2 file and I obtained two prepin
> file. Then, I used the sequence command in leap to merge the two units
> but the wrong tail and head atoms are taken. How can I manually define
> these atoms? Thanks.

See the "set" command (looking for "head" and "tail") in section 3.4.38 of
the Users' Manual.

...dac


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Received on Thu Apr 14 2011 - 11:30:02 PDT
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