Re: [AMBER] Problem with VMD

From: Jason Swails <jason.swails.gmail.com>
Date: Wed, 13 Apr 2011 09:22:42 -0700

What did you do in ptraj? Did you strip any waters?

Do the frames that show up look good, or do they look warped?

--Jason

On Wed, Apr 13, 2011 at 7:34 AM, juzer stationwala <juzer.niper.gmail.com>wrote:

> Hello all
> I am using VMD 1.8.7
> I have a coordinate file having coordinates for 2600 time steps.
> While analysing with ptraj the whole analysis is perfect & results after
> analysis of all 2600 frames are obtained, but when I try to load it in VMD
> no more then 1601 frames are observed.
> Kindly help me out.
>
> --
> Regards:
>
> Juzer Stationwala,
> Dept. of Pharmacoinformatics,
> National Institute of Pharmaceutical Education & Research
> (NIPER)
> Mohali,
> Punjab.
> India
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>



-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Wed Apr 13 2011 - 09:30:07 PDT
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