Dear Amber Users
I am going to start a new Project studying Protein-Coactivator Interactions.
I would like to carry out MD and FEP calculations with AMBER
but i have not experience
I am working with the tutorials, but anyway I have several doubts
My first goal is set up a good protocol to fit the protein:
1. Adjust hydrogens and protonation state
2. Correct the lost aminoacides
3. ...
i.e. make all the preparation steps to have a good model for the following
studies
Could anybody give me any orientation/recommendations?
Thank you so much
Fernando Blanco
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Received on Tue Apr 12 2011 - 10:30:03 PDT
