[AMBER] creating ssdna from dsdna

From: majid hasan <pu_majidhasan.yahoo.com>
Date: Sun, 10 Apr 2011 17:23:31 -0700 (PDT)

Dear All,

I am trying to create a single strand DNA to simulate DNA-CNT interaction in
gromacs. I created a double strand dna using


nab bdna.nab
./a.out

So how do I obtain a single strand dna from it? If I just remove the B-strand
from .pdb file in text editor, will it work?

Thank You,
Majid
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Received on Sun Apr 10 2011 - 17:30:02 PDT
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