[AMBER] how to obtain 4x4x1.1nm water

From: MD <ptf1242.163.com>
Date: Thu, 7 Apr 2011 12:16:20 +0800 (CST)

At 2011-03-14 20:44:42£¬gromacs <ptf1242.163.com> wrote:


Hi everyone,


I use AMBER 9.
Can anybody tell me how to get 4x4x1.1 box, and then fill this box with water (e.g. SPCBOX)?

i know SolvateOct will solvate a cubic water box.

 

I can use command: a=copy SPC

then use: solvateOct or solvateBox a SPCBOX 9

but i do not know how to obtain a rectangle with water, and also need the density is around 1 g/cc.




Thanks in advance!

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Received on Wed Apr 06 2011 - 21:30:02 PDT
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