Hi Zhe,
It is best to post such questions to the AMBER mailing list so others can
see the responses and also help. It looks like from the output you showed
that there was an issue loading the pdb file into the unit dna1. However, it
is hard to help without seeing the full output.
Check it carefully for error messages and how it might differ from the
tutorial.
All the best
Ross
> -----Original Message-----
> From: ³ÂÕÜ [mailto:zhechen.whu.edu.cn]
> Sent: Wednesday, April 06, 2011 1:36 PM
> To: amber_tutorial_query.rosswalker.co.uk
> Subject: problem about addions
>
>
> I am a new man to study Amber, and I was practicing "Introductory
> Tutorials -> TUTORIAL B1:Simulating a small fragment of DNA".
> http://ambermd.org/tutorials/basic/tutorial1/section2.htm
>
> When I procceded to addions function of xleap, I can't acquire prints
> as tutorials. When I input "addions dna1 Na+ 0", it always print as my
> attachment.
>
> I don't know why, and need some help.
>
> What I test is AmberTools-1.4, and my OS is ubuntu-10.10 32-bit.
>
> I am looking forward to hear from you.
>
> Regards
>
>
> --
> Zhe Chen
> College of Life Sciences
> Wuhan University
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Received on Wed Apr 06 2011 - 14:00:02 PDT
