It doesn't have error message but the file was incomplete because it doesn't
contain the RMS calculations at the end.
Now i am trying with ntpr=1
Regards,
Vani
On Thu, Mar 24, 2011 at 12:56 PM, Jason Swails <jason.swails.gmail.com>wrote:
> I don't see any error message in your email, so it's impossible to diagnose
> remotely.  Can you find any error message from the standard output/standard
> error streams?  A cluster should save those to separate files if that's
> where you're running.
>
> Another common suggestion is to run with ntpr=1 and take a look at what
> happens at each step to narrow in on what's happening.
>
> Good luck,
> Jason
>
> On Thu, Mar 24, 2011 at 10:47 AM, vani panguluri <vanipanguluri.gmail.com
> >wrote:
>
> > hello amber users,
> >
> > I am using the sander for md simulation during the process it was
> > terminating in the middle and the out in the heat.out file was like this
> > *sander -O -i heat.in -o heat.out -p pdb1k4u_apo2_sol.prmtop -c min.rst
> -r
> > heat.rst -x heat.mdcrd -ref min.rst*
> >
> > *Output:-*
> >  -------------------------------------------------------
> >          Amber 11 SANDER                              2010
> >          -------------------------------------------------------
> >
> > | Run on 03/24/2011 at 10:21:13
> >  [-O]verwriting output
> >
> > File Assignments:
> > |  MDIN: heat.in
> > | MDOUT: heat.out
> > |INPCRD: min.rst
> > |  PARM: pdb1k4u_apo2_sol.prmtop
> > |RESTRT: heat.rst
> > |  REFC: min.rst
> > | MDVEL: mdvel
> > |  MDEN: mden
> > | MDCRD: heat.mdcrd
> > |MDINFO: mdinfo
> > |  MTMD: mtmd
> > |INPDIP: inpdip
> > |RSTDIP: rstdip
> >
> > |INPTRA: inptraj
> > |
> >
> >  Here is the input file:
> >
> > heat pdb1k4u_apo2
> >  &cntrl
> >  imin=0,irest=0,ntx=1,
> >  nstlim=25000,dt=0.002,
> >  ntc=2,ntf=2,
> >  cut=8.0, ntb=1,
> >  ntpr=500, ntwx=500,
> >  ntt=3, gamma_ln=2.0,
> >  tempi=0.0, temp0=300.0,
> >  ntr=1,
> >  nmropt=1
> >  /
> >  &wt TYPE='TEMP0', istep1=0, istep2=25000,
> >  value1=0.1, value2=300.0, /
> >  &wt TYPE='END' /
> > BlAH
> > 2.0
> > RES 1 242
> > END
> > END
> >
> >
> >
> >
> --------------------------------------------------------------------------------
> >   1.  RESOURCE   USE:
> >
> >
> --------------------------------------------------------------------------------
> >
> > | Flags:
> >  getting new box info from bottom of inpcrd
> > |  INFO: Old style inpcrd file read
> >
> > | peek_ewald_inpcrd: Box info found
> > |Largest sphere to fit in unit cell has radius =    32.368
> > | New format PARM file being parsed.
> > | Version =    1.000 Date = 03/23/11 Time = 00:31:52
> >  NATOM  =   24182 NTYPES =      16 NBONH =   23441 MBONA  =     753
> >  NTHETH =    1721 MTHETA =    1017 NPHIH =    3206 MPHIA  =    2555
> >  NHPARM =       0 NPARM  =       0 NNB   =   38524 NRES   =    7659
> >  NBONA  =     753 NTHETA =    1017 NPHIA =    2555 NUMBND =      47
> >  NUMANG =      87 NPTRA  =      41 NATYP =      35 NPHB   =       1
> >  IFBOX  =       1 NMXRS  =      24 IFCAP =       0 NEXTRA =       0
> >  NCOPY  =       0
> >
> >
> > |     Memory Use     Allocated
> > |     Real             1342688
> > |     Hollerith          80207
> > |     Integer           828340
> > |     Max Pairs        8060666
> > |     nblistReal        290184
> > |     nblist Int       1300633
> > |       Total            52873 kbytes
> >
> > | Note: 1-4 EEL scale factors were NOT found in the topology file.
> > |       Using default value of 1.2.
> >
> > | Note: 1-4 VDW scale factors were NOT found in the topology file.
> > |       Using default value of 2.0.
> > | Duplicated    0 dihedrals
> > | Duplicated    0 dihedrals
> >
> >     BOX TYPE: RECTILINEAR
> >
> >
> >
> --------------------------------------------------------------------------------
> >   2.  CONTROL  DATA  FOR  THE  RUN
> >
> >
> --------------------------------------------------------------------------------
> >
> >
> >
> > General flags:
> >     imin    =       0, nmropt  =       1
> >
> > Nature and format of input:
> >     ntx     =       1, irest   =       0, ntrx    =       1
> >
> > Nature and format of output:
> >     ntxo    =       1, ntpr    =     500, ntrx    =       1, ntwr    =
> > 500
> >     iwrap   =       0, ntwx    =     500, ntwv    =       0, ntwe    =
> >  0
> >     ioutfm  =       0, ntwprt  =       0, idecomp =       0, rbornstat=
> >  0
> >
> > Potential function:
> >     ntf     =       2, ntb     =       1, igb     =       0, nsnb    =
> >  25
> >     ipol    =       0, gbsa    =       0, iesp    =       0
> >     dielc   =   1.00000, cut     =   8.00000, intdiel =   1.00000
> >
> > Frozen or restrained atoms:
> >     ibelly  =       0, ntr     =       1
> >
> > Molecular dynamics:
> >     nstlim  =     25000, nscm    =         0, nrespa  =         1
> >     t       =   0.00000, dt      =   0.00200, vlimit  =  20.00000
> >
> > Langevin dynamics temperature regulation:
> >     ig      =   71277
> >     temp0   = 300.00000, tempi   =   0.00000, gamma_ln=   2.00000
> >
> > SHAKE:
> >     ntc     =       2, jfastw  =       0
> >     tol     =   0.00001
> >
> > NMR refinement options:
> >     iscale  =       0, noeskp  =       1, ipnlty  =       1, mxsub   =
> >  1
> >     scalm   = 100.00000, pencut  =   0.10000, tausw   =   0.10000
> >
> > Ewald parameters:
> >     verbose =       0, ew_type =       0, nbflag  =       1, use_pme =
> >  1
> >     vdwmeth =       1, eedmeth =       1, netfrc  =       1
> >     Box X =   64.737   Box Y =   70.948   Box Z =   67.136
> >     Alpha =   90.000   Beta  =   90.000   Gamma =   90.000
> >     NFFT1 =   64       NFFT2 =   72       NFFT3 =   72
> >     Cutoff=    8.000   Tol   =0.100E-04
> >     Ewald Coefficient =  0.34864
> >     Interpolation order =    4
> >
> >    LOADING THE CONSTRAINED ATOMS AS GROUPS
> >
> >
> >   5.  REFERENCE ATOM COORDINATES
> >
> >
> >    ----- READING GROUP     1; TITLE:
> >  BlAH
> >
> >     GROUP    1 HAS HARMONIC CONSTRAINTS     2.00000
> >  GRP    1 RES    1 TO   242
> >      Number of atoms in this group  =  1931
> >    ----- END OF GROUP READ -----
> >
> >
> >
> --------------------------------------------------------------------------------
> >   3.  ATOMIC COORDINATES AND VELOCITIES
> >
> >
> --------------------------------------------------------------------------------
> >
> >
> >  begin time read from input coords =     0.000 ps
> >
> >
> >
> >           Begin reading energy term weight changes/NMR restraints
> >  WEIGHT CHANGES:
> >  TEMP0         0  25000    0.100000  300.000000      0      0
> >
> >  RESTRAINTS:
> >  No valid redirection requests found
> >                          ** No restraint defined **
> >
> >                  Done reading weight changes/NMR restraints
> >
> >
> >  Number of triangulated 3-point waters found:     7564
> >
> >     Sum of charges from parm topology file =  -3.00000003
> >     Assuming uniform neutralizing plasma
> >
> >
> >
> --------------------------------------------------------------------------------
> >   4.  RESULTS
> >
> >
> --------------------------------------------------------------------------------
> >
> > |  # of SOLUTE  degrees of freedom (RNDFP):   49105.
> > |  # of SOLVENT degrees of freedom (RNDFS):       0.
> > |  NDFMIN =   49105.     NUM_NOSHAKE =      0     CORRECTED RNDFP =
> > 49105.
> > |  TOTAL # of degrees of freedom (RNDF) =   49105.
> >  ---------------------------------------------------
> >  APPROXIMATING switch and d/dx switch using CUBIC SPLINE INTERPOLATION
> >  using   5000.0 points per unit in tabled values
> >  TESTING RELATIVE ERROR over r ranging from 0.0 to cutoff
> > | CHECK switch(x): max rel err =   0.2738E-14   at   2.422500
> > | CHECK d/dx switch(x): max rel err =   0.8314E-11   at   2.736960
> >  ---------------------------------------------------
> > | Local SIZE OF NONBOND LIST =    4134189
> > | TOTAL SIZE OF NONBOND LIST =    4134189
> >
> >  NSTEP =        0   TIME(PS) =       0.000  TEMP(K) =     0.00  PRESS =
> > 0.0
> >  Etot   =    -67866.2635  EKtot   =         0.0000  EPtot      =
> >  -67866.2635
> >  BOND   =        31.0171  ANGLE   =       169.8340  DIHED      =
> >  1090.8243
> >  1-4 NB =       424.8482  1-4 EEL =      4660.1412  VDWAALS    =
> >  4589.3108
> >  EELEC  =    -78832.2390  EHBOND  =         0.0000  RESTRAINT  =
> > 0.0000
> >  Ewald error estimate:   0.7614E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =      500   TIME(PS) =       1.000  TEMP(K) =    47.66  PRESS =
> > 0.0
> >  Etot   =    -85453.1115  EKtot   =      2325.4435  EPtot      =
> >  -87778.5550
> >  BOND   =        43.4984  ANGLE   =       206.9241  DIHED      =
> >  1002.0524
> >  1-4 NB =       342.7681  1-4 EEL =      4572.8643  VDWAALS    =
> > 15581.9365
> >  EELEC  =   -109890.0083  EHBOND  =         0.0000  RESTRAINT  =
> > 361.4094
> >  EAMBER (non-restraint)  =    -88139.9645
> >  Ewald error estimate:   0.2329E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     1000   TIME(PS) =       2.000  TEMP(K) =    18.63  PRESS =
> > 0.0
> >  Etot   =    -89269.2449  EKtot   =       908.9589  EPtot      =
> >  -90178.2037
> >  BOND   =        41.6598  ANGLE   =       205.1703  DIHED      =
> >  1003.6214
> >  1-4 NB =       345.2256  1-4 EEL =      4582.3395  VDWAALS    =
> > 17090.0126
> >  EELEC  =   -113778.0157  EHBOND  =         0.0000  RESTRAINT  =
> > 331.7828
> >  EAMBER (non-restraint)  =    -90509.9866
> >  Ewald error estimate:   0.3114E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     1500   TIME(PS) =       3.000  TEMP(K) =    17.59  PRESS =
> > 0.0
> >  Etot   =    -89721.9185  EKtot   =       858.2083  EPtot      =
> >  -90580.1268
> >  BOND   =        48.4207  ANGLE   =       210.8804  DIHED      =
> >  1001.3563
> >  1-4 NB =       347.9077  1-4 EEL =      4577.7689  VDWAALS    =
> > 17267.1602
> >  EELEC  =   -114356.4861  EHBOND  =         0.0000  RESTRAINT  =
> > 322.8651
> >  EAMBER (non-restraint)  =    -90902.9919
> >  Ewald error estimate:   0.1980E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     2000   TIME(PS) =       4.000  TEMP(K) =    22.00  PRESS =
> > 0.0
> >  Etot   =    -89430.1844  EKtot   =      1073.3741  EPtot      =
> >  -90503.5585
> >  BOND   =        49.6331  ANGLE   =       219.5662  DIHED      =
> >  1006.0362
> >  1-4 NB =       347.5233  1-4 EEL =      4572.7148  VDWAALS    =
> > 17255.5088
> >  EELEC  =   -114278.2281  EHBOND  =         0.0000  RESTRAINT  =
> > 323.6872
> >  EAMBER (non-restraint)  =    -90827.2457
> >  Ewald error estimate:   0.2090E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     2500   TIME(PS) =       5.000  TEMP(K) =    27.74  PRESS =
> > 0.0
> >  Etot   =    -89008.9434  EKtot   =      1353.4825  EPtot      =
> >  -90362.4259
> >  BOND   =        58.4709  ANGLE   =       236.9170  DIHED      =
> >  1008.8628
> >  1-4 NB =       348.7314  1-4 EEL =      4569.0384  VDWAALS    =
> > 17189.9260
> >  EELEC  =   -114103.0239  EHBOND  =         0.0000  RESTRAINT  =
> > 328.6515
> >  EAMBER (non-restraint)  =    -90691.0774
> >  Ewald error estimate:   0.2593E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     3000   TIME(PS) =       6.000  TEMP(K) =    33.60  PRESS =
> > 0.0
> >  Etot   =    -88503.6628  EKtot   =      1639.3219  EPtot      =
> >  -90142.9847
> >  BOND   =        65.6348  ANGLE   =       245.9596  DIHED      =
> >  1007.8235
> >  1-4 NB =       349.7460  1-4 EEL =      4572.6333  VDWAALS    =
> > 17019.4238
> >  EELEC  =   -113744.3925  EHBOND  =         0.0000  RESTRAINT  =
> > 340.1869
> >  EAMBER (non-restraint)  =    -90483.1716
> >  Ewald error estimate:   0.2305E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     3500   TIME(PS) =       7.000  TEMP(K) =    39.08  PRESS =
> > 0.0
> >  Etot   =    -88019.0265  EKtot   =      1906.5905  EPtot      =
> >  -89925.6170
> >  BOND   =        63.2188  ANGLE   =       256.4110  DIHED      =
> >  1013.9218
> >  1-4 NB =       348.6459  1-4 EEL =      4587.8149  VDWAALS    =
> > 16991.6064
> >  EELEC  =   -113525.9987  EHBOND  =         0.0000  RESTRAINT  =
> > 338.7630
> >  EAMBER (non-restraint)  =    -90264.3800
> >  Ewald error estimate:   0.2235E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     4000   TIME(PS) =       8.000  TEMP(K) =    44.89  PRESS =
> > 0.0
> >  Etot   =    -87487.5513  EKtot   =      2190.4102  EPtot      =
> >  -89677.9615
> >  BOND   =        70.5605  ANGLE   =       267.6956  DIHED      =
> >  1013.6091
> >  1-4 NB =       352.1245  1-4 EEL =      4581.7202  VDWAALS    =
> > 16856.0294
> >  EELEC  =   -113149.4318  EHBOND  =         0.0000  RESTRAINT  =
> > 329.7311
> >  EAMBER (non-restraint)  =    -90007.6926
> >  Ewald error estimate:   0.2511E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     4500   TIME(PS) =       9.000  TEMP(K) =    51.23  PRESS =
> > 0.0
> >  Etot   =    -86949.7560  EKtot   =      2499.7782  EPtot      =
> >  -89449.5342
> >  BOND   =        74.2649  ANGLE   =       274.6854  DIHED      =
> >  1010.1647
> >  1-4 NB =       348.0945  1-4 EEL =      4577.9661  VDWAALS    =
> > 16890.9233
> >  EELEC  =   -112959.6407  EHBOND  =         0.0000  RESTRAINT  =
> > 334.0074
> >  EAMBER (non-restraint)  =    -89783.5417
> >  Ewald error estimate:   0.2989E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     5000   TIME(PS) =      10.000  TEMP(K) =    57.09  PRESS =
> > 0.0
> >  Etot   =    -86383.6060  EKtot   =      2785.6540  EPtot      =
> >  -89169.2600
> >  BOND   =        80.1776  ANGLE   =       291.2072  DIHED      =
> >  1015.6714
> >  1-4 NB =       353.7537  1-4 EEL =      4582.2307  VDWAALS    =
> > 16656.8709
> >  EELEC  =   -112502.2074  EHBOND  =         0.0000  RESTRAINT  =
> > 353.0360
> >  EAMBER (non-restraint)  =    -89522.2960
> >  Ewald error estimate:   0.2921E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     5500   TIME(PS) =      11.000  TEMP(K) =    63.42  PRESS =
> > 0.0
> >  Etot   =    -85829.5087  EKtot   =      3094.1893  EPtot      =
> >  -88923.6981
> >  BOND   =        77.0232  ANGLE   =       309.7384  DIHED      =
> >  1012.8366
> >  1-4 NB =       355.3480  1-4 EEL =      4593.4603  VDWAALS    =
> > 16624.8220
> >  EELEC  =   -112237.7220  EHBOND  =         0.0000  RESTRAINT  =
> > 340.7954
> >  EAMBER (non-restraint)  =    -89264.4935
> >  Ewald error estimate:   0.3281E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     6000   TIME(PS) =      12.000  TEMP(K) =    68.70  PRESS =
> > 0.0
> >  Etot   =    -85352.8414  EKtot   =      3351.7417  EPtot      =
> >  -88704.5830
> >  BOND   =        85.4318  ANGLE   =       318.3891  DIHED      =
> >  1020.2065
> >  1-4 NB =       353.6599  1-4 EEL =      4583.8022  VDWAALS    =
> > 16618.2103
> >  EELEC  =   -112037.8932  EHBOND  =         0.0000  RESTRAINT  =
> > 353.6104
> >  EAMBER (non-restraint)  =    -89058.1934
> >  Ewald error estimate:   0.3406E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     6500   TIME(PS) =      13.000  TEMP(K) =    75.35  PRESS =
> > 0.0
> >  Etot   =    -84795.5885  EKtot   =      3676.5201  EPtot      =
> >  -88472.1086
> >  BOND   =        93.3939  ANGLE   =       331.9302  DIHED      =
> >  1019.2704
> >  1-4 NB =       354.4867  1-4 EEL =      4586.6428  VDWAALS    =
> > 16343.5169
> >  EELEC  =   -111568.0050  EHBOND  =         0.0000  RESTRAINT  =
> > 366.6556
> >  EAMBER (non-restraint)  =    -88838.7642
> >  Ewald error estimate:   0.2858E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     7000   TIME(PS) =      14.000  TEMP(K) =    81.70  PRESS =
> > 0.0
> >  Etot   =    -84231.4324  EKtot   =      3986.2318  EPtot      =
> >  -88217.6642
> >  BOND   =        91.0481  ANGLE   =       331.4721  DIHED      =
> >  1022.4532
> >  1-4 NB =       357.9641  1-4 EEL =      4573.0827  VDWAALS    =
> > 16436.7602
> >  EELEC  =   -111396.0460  EHBOND  =         0.0000  RESTRAINT  =
> > 365.6016
> >  EAMBER (non-restraint)  =    -88583.2658
> >  Ewald error estimate:   0.3731E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     7500   TIME(PS) =      15.000  TEMP(K) =    88.20  PRESS =
> > 0.0
> >  Etot   =    -83664.6370  EKtot   =      4303.5114  EPtot      =
> >  -87968.1484
> >  BOND   =       105.3223  ANGLE   =       342.3931  DIHED      =
> >  1014.6877
> >  1-4 NB =       354.3987  1-4 EEL =      4585.1425  VDWAALS    =
> > 16297.6518
> >  EELEC  =   -111042.1434  EHBOND  =         0.0000  RESTRAINT  =
> > 374.3989
> >  EAMBER (non-restraint)  =    -88342.5473
> >  Ewald error estimate:   0.3299E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     8000   TIME(PS) =      16.000  TEMP(K) =    93.03  PRESS =
> > 0.0
> >  Etot   =    -83169.4618  EKtot   =      4538.9027  EPtot      =
> >  -87708.3646
> >  BOND   =       103.9290  ANGLE   =       352.7595  DIHED      =
> >  1032.9506
> >  1-4 NB =       361.4146  1-4 EEL =      4582.1795  VDWAALS    =
> > 16100.3950
> >  EELEC  =   -110608.5699  EHBOND  =         0.0000  RESTRAINT  =
> > 366.5770
> >  EAMBER (non-restraint)  =    -88074.9416
> >  Ewald error estimate:   0.3722E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     8500   TIME(PS) =      17.000  TEMP(K) =    99.27  PRESS =
> > 0.0
> >  Etot   =    -82627.3099  EKtot   =      4843.2214  EPtot      =
> >  -87470.5313
> >  BOND   =       113.5459  ANGLE   =       362.8084  DIHED      =
> >  1027.5293
> >  1-4 NB =       356.3530  1-4 EEL =      4589.4224  VDWAALS    =
> > 16074.2522
> >  EELEC  =   -110361.3148  EHBOND  =         0.0000  RESTRAINT  =
> > 366.8723
> >  EAMBER (non-restraint)  =    -87837.4036
> >  Ewald error estimate:   0.3323E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> >
> >  NSTEP =     9000   TIME(PS) =      18.000  TEMP(K) =   105.37  PRESS =
> > 0.0
> >  Etot   =    -82115.5757  EKtot   =      5141.0624  EPtot      =
> >  -87256.6381
> >  BOND   =       119.1134  ANGLE   =       374.1381  DIHED      =
> >  1036.3070
> >  1-4 NB =       357.5211  1-4 EEL =      4560.3641  VDWAALS    =
> > 16001.5727
> >  EELEC  =   -110093.3922  EHBOND  =         0.0000  RESTRAINT  =
> > 387.7377
> >  EAMBER (non-restraint)  =    -87644.3759
> >  Ewald error estimate:   0.3482E-03
> >
> >
>  ------------------------------------------------------------------------------
> >
> >  NMR restraints: Bond =    0.000   Angle =     0.000   Torsion =
> 0.000
> >
> >
> ===============================================================================
> > "heat.out" 424L, 22218C written
> >
> >
> >
> > Can any check this and tell me where the problem occurs.
> >
> >
> > Regards,
> > Vani
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Mar 24 2011 - 11:30:03 PDT