The system is a coiled-coil with two strands composed of 5 monomeric units on
each. Each monomer is a 28 aa alpha helix. For the purposes of this discussion,
I think it could be viewed as a monomer.
________________________________
From: Carlos Simmerling <carlos.simmerling.gmail.com>
To: AMBER Mailing List <amber.ambermd.org>
Sent: Wed, March 23, 2011 8:24:58 PM
Subject: Re: [AMBER] odd output from rms measurement
Is the system a monomer?
On Mar 23, 2011 7:50 PM, "Chris Chris" <alpharecept.yahoo.com> wrote:
I used ptraj with the following input file:
trajin g1tetra_prod_mdx1
trajin g1tetra_prod_mdx2
rms first out g1tetra_rms_1_112.dat :1-112 .CA, C, N
strip :WAT
go
________________________________
From: Carlos Simmerling <carlos.simmerling.gmail.com>
To: AMBER Mailing List <amber.ambermd.org>
Sent: Wed, March 23, 2011 6:15:58 PM
Subject: Re: [AMBER] odd output from rms measurement
We need to know how this was calculated.
On Mar 23, 2011 5:56 PM, "Chris Chris" <alpharecept.yahoo...
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Received on Wed Mar 23 2011 - 19:00:02 PDT
