Re: [AMBER] Doubts in MM-PBSA

From: vani panguluri <>
Date: Tue, 22 Mar 2011 20:01:30 -0500

Actually I am talking about NAMD simulation for performing that simulation I
already used the antechamber forcefield I got the output files such as
apo.namd, apo.out,apo.dcd, apo.xst like that but I can't able to use the
MMPBSA TO GET the overall free binding energy. But while I am trying to use
MMPBSA it was generating the errors. I want to know how can I use that with
those output files actually I followed that tutorial but it was generating
some error.

On Mar 22, 2011 6:05 PM, "Jason Swails" <> wrote:
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Received on Tue Mar 22 2011 - 18:30:02 PDT
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