Dr. Huynh,
It worked! I would have never found that change. The serial version of
AmberTools and Amber11 were correctly installed. Some errors and failures
came up (diffrent ones than before), but I'll post about them in a new email
thread.
Thanks,
David
On Sat, Mar 19, 2011 at 7:30 PM, Tru Huynh <tru.pasteur.fr> wrote:
> On Tue, Mar 15, 2011 at 09:08:04PM -0500, David Cantu wrote:
> > By the way, this is the error that came out during the "make serial"
> > command:
> >
> > ../netcdf/lib/libnetcdf.a(netcdf.o): In function
> > `__netcdf_MOD_nf90_rename_var':
> > netcdf.f90:(.text+0x1b73): undefined reference to `nf_rename_var_'
> > collect2: ld returned 1 exit status
> > make[1]: *** [sander] Error 1
> > make[1]: Leaving directory
> > `/working002b/chem_eng3/dcantu/amber11/src/sander'
> > make: *** [serial] Error 2
> >
> > Thanks,
> >
> I don't recall the reason, but I had to fix the netcdf/config.h to make it
> built
> with the gcc44 compilers (after patching the configure script).
>
>
> [tru.sillage src]$ diff -uNr config.h-automatic config.h
> --- config.h-automatic 2010-11-02 14:45:37.000000000 +0100
> +++ config.h 2010-11-02 21:06:10.000000000 +0100
> .. -198,10 +198,10 ..
> /* #undef const */
>
> /* Turned on by netCDF configure. */
> -#define f2cFortran 1
> +/* #undef f2cFortran */
>
> /* Turned on by netCDF configure. */
> -/* #undef gFortran */
> +#define gFortran 1
>
> /* Define to `long' if <sys/types.h> does not define. */
> /* #undef off_t */
>
> my 2 cents
>
> Tru
> --
> Dr Tru Huynh | http://www.pasteur.fr/recherche/unites/Binfs/
> mailto:tru.pasteur.fr | tel/fax +33 1 45 68 87 37/19
> Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
>
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Received on Sun Mar 20 2011 - 02:00:03 PDT
